The Lineberger Bioinformatics Core (LBC) offers the following applications for use. Many are protected by authentication and / or require UNC network access. If issue arise, please verify VPN usage if off-campus, and email informaticshelp@unc.edu if issues persist.
Clinical
Sample cohort processing/sequencing tracking for cohorts of samples submitted by investigators to the Office of Genomics Research (OGR), as well as tracking of sample inventory in LIMS for various research studies
Patient database for study coordinators to enter demographic info about patients, assign unique de-identified identifiers, and track screening/enrollment in various research studies
Enhanced version of Central Patient Registry that includes UNC Health OR schedule tracking and searching for use by the Tissue Procurement Facility
Metaclinic cancer specific database for the LCCC9830 protocol, and other related Breast cancer protocols for PI Charles Perou
Metaclinic cancer specific database for the Head and Neck Oncology Program at UNC Health
Metaclinic cancer specific database for the Urologic Oncology Program at UNC Health
Web interface for SAS clinical trial reporting
Metaclinic database to track general information of UNC and related Oncology physicians
LIMS
Java client for managing samples in the Tissue Procurement Facility
Web-based application for managing samples in the Tissue Procurement Facility
Bioinformatics Cluster
Dataset and workflow management web application providing users with a platform for routine processing of standard NGS data types, including bulk RNA-Seq, DNA-Seq, and some 10x Genomics single-cell data types
Web-based portal for LBC cluster resources, offering access to files, job submission, documentation, shell access, and interactive apps like RStudio, JupyterHub, and VSCode